Glyma17g37060 - SoyBase

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Report for Sequence Feature Glyma17g37060

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40920324
stop:	40923981
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g37060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42800	AT	Annotation by Michelle Graham. TAIR10: dihydroflavonol 4-reductase \| chr5:17164296-17165864 REVERSE LENGTH=382	SoyBase	E_val: 1.00E-174	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0042406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0045552	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrokaempferol 4-reductase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_A2IBG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase 2 n=2 Tax=Glycine max RepID=A2IBG7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_A2IBG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Dihydroflavonol-4-reductase 2 n=2 Tax=Glycine max RepID=A2IBG7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g37060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g37060

Paralog	Evidence	Comments
Glyma14g07940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g37060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g252200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g37060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g37060

Limit To All Plant Sequences

>Glyma17g37060.2   sequence type=transcript   gene model=Glyma17g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAACAATAAAAAGGATATTTAAAAGCTCAGTCCTCTTTGTGCAATTGTTTCTATAAAAGCACCCACTTCATACGGTTTCTTCCATTCCATTTTCAAGCTAAGCCTTATAAATAATAAGAGCAAAAAAAAAAAACCAAAACAACGAGAGAGAGAACATGGGTTCAAGTTCAGCATCCGAAAGTGTTTGCGTTACAGGAGCCTCTGGTTTCATCGGGTCATGGCTTGTCATGAGACTCATCGAGCGTGGCTACACGGTCCGAGCCACTGTACGCGATCCAGCTAACATGAAGAAGGTGAAGCATTTGGTGGAGCTTCCAGGTGCAAAGACCAAATTGTCTCTGTGGAAGGCTGATCTTGCTCAAGAGGGAAGCTTTGATGAAGCCATTAAAGGCTGCACTGGAGTTTTCCACGTGGCAACCCCCATGGATTTTGACTCCAAGGACCCTGAGAATGAAGTGATAAAGCCTACAATAAACGGATTGCTAGACATCATGAAAGCATGCGTGAAGGCCAAAACTGTCCGAAGGCTTGTATTCACTTCCTCAGCGGGAACTGTGGATGTTACGGAACACCCAAACCCTGTCATCGATGAGAACTGTTGGAGCGATGTTGACTTCTGCACAAGGGTCAAAATGACTGGTTGGATGTATTTTGTTTCAAAGACCCTGGCGGAGCAAGAAGCGTGGAAATATGCCAAAGAGCACAACATAGACTTTATATCAGTCATTCCACCCCTTGTCGTTGGCCCCTTTCTTATGCCAACAATGCCACCTAGCCTAATCACTGCTCTTTCACTAATCACAGGAAATGAGTCCCATTACCATATCATAAAGCAGGGCCAGTTCGTACACTTAGATGACCTTTGTCTTGGCCATATATTCGTGTTCGAGAATCCAAAAGCCGAAGGGAGGTACATATGCTGTTCACACGAGGCAACCATTCATGACATTGCAAAACTGCTTAACCAAAAATACCCTGAGTATAATGTCCTTACTAAGTAAGACTCGTTTCGTTAATTGCATGTACATAGAGTATTACAGTAATAATAATACATTAATATGTATGAATAATACACAAATTGTATGTAT

Coding sequences of Glyma17g37060

Limit To All Plant Sequences

>Glyma17g37060.1   sequence type=CDS   gene model=Glyma17g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAAGTTCAGCATCCGAAAGTGTTTGCGTTACAGGAGCCTCTGGTTTCATCGGGTCATGGCTTGTCATGAGACTCATCGAGCGTGGCTACACGGTCCGAGCCACTGTACGCGATCCAGCTAACATGAAGAAGGTGAAGCATTTGGTGGAGCTTCCAGGTGCAAAGACCAAATTGTCTCTGTGGAAGGCTGATCTTGCTCAAGAGGGAAGCTTTGATGAAGCCATTAAAGGCTGCACTGGAGTTTTCCACGTGGCAACCCCCATGGATTTTGACTCCAAGGACCCTGAGAATGAAGTGATAAAGCCTACAATAAACGGATTGCTAGACATCATGAAAGCATGCGTGAAGGCCAAAACTGTCCGAAGGCTTGTATTCACTTCCTCAGCGGGAACTGTGGATGTTACGGAACACCCAAACCCTGTCATCGATGAGAACTGTTGGAGCGATGTTGACTTCTGCACAAGGGTCAAAATGACTGGTTGGATGTATTTTGTTTCAAAGACCCTGGCGGAGCAAGAAGCGTGGAAATATGCCAAAGAGCACAACATAGACTTTATATCAGTCATTCCACCCCTTGTCGTTGGCCCCTTTCTTATGCCAACAATGCCACCTAGCCTAATCACTGCTCTTTCACTAATCACAGGAAATGAGTCCCATTACCATATCATAAAGCAGGGCCAGTTCGTACACTTAGATGACCTTTGTCTTGGCCATATATTCGTGTTCGAGAATCCAAAAGCCGAAGGGAGGTACATATGCTGTTCACACGAGGCAACCATTCATGACATTGCAAAACTGCTTAACCAAAAATACCCTGAGTATAATGTCCTTACTAAGTTCAAGAATATTCCAGATGAATTGGACATTATTAAATTTTCTTCGAAGAAGATCACAGACTTGGGCTTCAAATTTAAGTACAGCTTAGAGGATATGTTTACTGGAGCCGTTGAAACCTGCAGAGAAAAAGGGCTTCTTCCTAAACCTGAAGAAACTACAGTTAATAATGAGCTTCTTCCTAAACCTGCAGAAACTACAGTTAATGACACTATGCAGAAATAA

>Glyma17g37060.2   sequence type=CDS   gene model=Glyma17g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCAAGTTCAGCATCCGAAAGTGTTTGCGTTACAGGAGCCTCTGGTTTCATCGGGTCATGGCTTGTCATGAGACTCATCGAGCGTGGCTACACGGTCCGAGCCACTGTACGCGATCCAGCTAACATGAAGAAGGTGAAGCATTTGGTGGAGCTTCCAGGTGCAAAGACCAAATTGTCTCTGTGGAAGGCTGATCTTGCTCAAGAGGGAAGCTTTGATGAAGCCATTAAAGGCTGCACTGGAGTTTTCCACGTGGCAACCCCCATGGATTTTGACTCCAAGGACCCTGAGAATGAAGTGATAAAGCCTACAATAAACGGATTGCTAGACATCATGAAAGCATGCGTGAAGGCCAAAACTGTCCGAAGGCTTGTATTCACTTCCTCAGCGGGAACTGTGGATGTTACGGAACACCCAAACCCTGTCATCGATGAGAACTGTTGGAGCGATGTTGACTTCTGCACAAGGGTCAAAATGACTGGTTGGATGTATTTTGTTTCAAAGACCCTGGCGGAGCAAGAAGCGTGGAAATATGCCAAAGAGCACAACATAGACTTTATATCAGTCATTCCACCCCTTGTCGTTGGCCCCTTTCTTATGCCAACAATGCCACCTAGCCTAATCACTGCTCTTTCACTAATCACAGGAAATGAGTCCCATTACCATATCATAAAGCAGGGCCAGTTCGTACACTTAGATGACCTTTGTCTTGGCCATATATTCGTGTTCGAGAATCCAAAAGCCGAAGGGAGGTACATATGCTGTTCACACGAGGCAACCATTCATGACATTGCAAAACTGCTTAACCAAAAATACCCTGAGTATAATGTCCTTACTAAGTAA

Predicted protein sequences of Glyma17g37060

Limit To All Plant Sequences

>Glyma17g37060.1   sequence type=predicted peptide   gene model=Glyma17g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSSASESVCVTGASGFIGSWLVMRLIERGYTVRATVRDPANMKKVKHLVELPGAKTKLSLWKADLAQEGSFDEAIKGCTGVFHVATPMDFDSKDPENEVIKPTINGLLDIMKACVKAKTVRRLVFTSSAGTVDVTEHPNPVIDENCWSDVDFCTRVKMTGWMYFVSKTLAEQEAWKYAKEHNIDFISVIPPLVVGPFLMPTMPPSLITALSLITGNESHYHIIKQGQFVHLDDLCLGHIFVFENPKAEGRYICCSHEATIHDIAKLLNQKYPEYNVLTKFKNIPDELDIIKFSSKKITDLGFKFKYSLEDMFTGAVETCREKGLLPKPEETTVNNELLPKPAETTVNDTMQK*

>Glyma17g37060.2   sequence type=predicted peptide   gene model=Glyma17g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSSASESVCVTGASGFIGSWLVMRLIERGYTVRATVRDPANMKKVKHLVELPGAKTKLSLWKADLAQEGSFDEAIKGCTGVFHVATPMDFDSKDPENEVIKPTINGLLDIMKACVKAKTVRRLVFTSSAGTVDVTEHPNPVIDENCWSDVDFCTRVKMTGWMYFVSKTLAEQEAWKYAKEHNIDFISVIPPLVVGPFLMPTMPPSLITALSLITGNESHYHIIKQGQFVHLDDLCLGHIFVFENPKAEGRYICCSHEATIHDIAKLLNQKYPEYNVLTK*

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